That is normal as each time you run TKLPatch it will decompress the patch to a randomly named temp folder.
From the output you provided it looks to me like it worked fine, the proof is in the pudding though so to speak. In other words, does it work? Try rebooting your LAMP appliance and see what happens and/or installing from the created ISO (You can do a test install to a VM using something like VirtualBox or similar.
You can ignore the different temp paths
That is normal as each time you run TKLPatch it will decompress the patch to a randomly named temp folder.
From the output you provided it looks to me like it worked fine, the proof is in the pudding though so to speak. In other words, does it work? Try rebooting your LAMP appliance and see what happens and/or installing from the created ISO (You can do a test install to a VM using something like VirtualBox or similar.